fix_missing_coords#

fix_missing_coords(mol, tmc_idx, missing_coord_indices)[source]#

Add coordinates to RDKit molecule with missing coordinates

Parameters:
  • mol (rdkit.Chem.rdchem.Mol) – RDKit to be repaired

  • tmc_idx (int) – Atom index of the complex metal

  • missing_coord_indices (list[int]) – Atom indices for which to find coordinates